# Setup Notes

## Gnuplot Setup 

Download latest Gnuplot version source code (4.6.0 at time of this
writing): <http://sourceforge.net/projects/gnuplot/files/>

### Mac Gnuplot Setup 

Short story: for legal reasons, Apple does not use ship Gnu Readline
library by default. The replacement library does not have all the
functionality needed for gnuplot, and this often causes errors.

1.  Download the latest version of Gnu Readline:
    <ftp://ftp.cwru.edu/pub/bash/readline-6.2.tar.gz>
2.  Untar it, `cd` to the new folder, and execute
    `./configure --prefix=/usr`, then `make everything`, then
    `sudo make install`.
3.  Then cd into the gnuplot source folder. Use `./configure`, `make`,
    and `sudo make install`.

## SPOCC Setup 

1.  Applied all Mac OS X Software Updates (Version 10.6.8)
2.  Installed all Mac OS X Developer Tools (from the XCode Installer on
    the Mac OS X Application Install DVD)
3.  Installed [Python 2.7.2
    64-bit](http://www.python.org/getit/releases/2.7.2/)
4.  Installed [Google Chrome](https://www.google.com/chrome/)
    1.  Added <http://699samiam.org/samwiki> to bookmarks bar (also did
        to Safari)
    2.  Enabled bookmarks bar
5.  Installed [Cyberduck 4.2.1](http://cyberduck.ch/)
    1.  Removed 3rd-party bookmarks
    2.  Bookmarked [SAMIAM-v](ftp://samiam-v.gsfc.nasa.gov/)
    3.  Bookmarked LabCVS
6.  Installed [OpenOffice 3.3.0](http://www.openoffice.org/)
7.  Installed [Text Wrangler
    3.5.3](http://www.barebones.com/products/TextWrangler/)
8.  Installed [GNU Readline
    6.2](http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html)
    1.  Downloaded the source code for [version
        6.2](ftp://ftp.cwru.edu/pub/bash/readline-6.2.tar.gz)
    2.  From terminal, extracted contents of the .tar.gz file and used
        \`cd\` to go to the newly-extracted directory
    3.  Executed \`./configure \--prefix=/usr\`
    4.  Executed \`make everything\`
    5.  Executed \`sudo make install\`
9.  Installed [Gnuplot 4.4.0](http://www.gnuplot.info/)
    1.  Downloaded Gnuplot [source
        code](http://sourceforge.net/projects/gnuplot/files/)
    2.  From terminal, extracted contents of .tar.gz file and used
        \`cd\` to go to the newly-extracted directory
    3.  Executed \`./configure\`
    4.  Executed \`make\`
    5.  Executed \`sudo make install\`
10. Installed [MacTeX](http://www.tug.org/mactex/2011/) (very long
    download; try to use the saved zip file from another SPOCC computer)
11. Installed [SAM Data View](SAMDataView "wikilink")
    1.  \'\'We are not going to use the standard installer (with the
        telemetry database, sample data, etc.) in the future. I did for
        this install, and I removed \`\~/SAM/gse\` from the filesystem.
    2.  There were some file permissions problems; I changed the
        permissions of \~/SAM to 755.\'\'
12. Installed [XINA](XINA "wikilink")
    1.  Extracted the downloadable zip file
    2.  Renamed the newly-extracted folder to XINA, and moved it to the
        Applications directory
13. Set up password-free access to LabCVS (Note: For the following: let
    \`LABCVS\` be the IP address for the LabCVS machine, and \`USER\` be
    the username. I did not want to post either in public.)
    1.  From terminal, executed \`ssh-keygen -t rsa\`.
    2.  From terminal, executed \`cat .ssh/id_rsa.pub \| ssh USER@LABCVS
        \"cat \>\> .ssh/authorized_keys\"\`
14. Did initial CVS configuration (See previous note about \`LABCVS\`
    and \`USER\`)
    1.  From terminal, executed \`export
        CVSROOT=\":ext:USER@LABCVS:/labcvs/labcode\"\`
    2.  From terminal, executed \`export CVS_RSH=ssh\`
    3.  From terminal, executed \`cd \$HOME\`
    4.  From terminal, executed \`cvs co spocc\`
    5.  Deleted existing copy of \$HOME/.bash_profile
    6.  From terminal (assumed to be in home directory still), executed
        \`ln -s spocc/bash_profile_ref .bash_profile\`
15. Exited and restarted terminal to let changes take effect.
16. Checked out gse directory from CVS
    1.  From terminal (in home directory), executed \`cvs checkout gse\`
    2.  From terminal, executed \`cd \~/SAM; ln -s ../gse gse\`
    3.  From terminal, executed \`mkdir \~/gse/data\`
17. Checked out Python code from CVS
    1.  From terminal (in home directory), executed \`cvs checkout
        labcode/tmutil\`
    2.  From terminal (in home directory), executed \`cvs checkout
        labcode/samutil\`
    3.  From terminal (in home directory), executed \`cvs checkout
        labcode/tmdataflow\`
18. Set up automatic updating (requires password-free LabCVS access; see
    above)
    1.  Created alias to \`\~/spocc/update_spocc.command\` on the
        Desktop, and renamed \`CLICK HERE TO UPDATE SPOCC\`
    2.  Added \`\~/spocc/update_spocc.command\` as a Login Item (updates
        CVS directories on login)

        :   Under System Preferences -\> Users -\> Username -\> Login
            Items -\> \"+\" (Where \"Username\" is the SPOCC username).
19. Downloaded all SAM Data
    1.  Created the following directories under \`\~/gse/data\`:
        \`data-2007\`, \`data-2008\`, \`data-2009\`, \`data-2010\`,
        \`data-2011\`
    2.  Downloaded data from 2007-2010 into appropriate subdirectories
        from <ftp://samiam-v.gsfc.nasa.gov>
    3.  Downloaded all 2011 data directly from LabCVS (SAMIAM-V is out
        of date) into \`data-2011\` subdirectory.
20. Miscellaneous system tweaks
    1.  Enabled Spaces
    2.  Enabled Exposé (corner shortcuts)
    3.  Increased mouse tracking speed, keyboard repeat rate
    4.  Removed household applications (iTunes, iPhoto, etc.) from Dock
        and added newly-installed applications
21. Installed Microsoft Office
22. Installed Net Connect (by logging into <http://vpn.jpl.nasa.gov>.

## Ops VM Setup 

1.  Applied all Ubuntu software updates.
2.  Used Synaptic package manager to install the following packages and
    their dependencies:

-  Development
    -  cervisia
    -  cvs
    -  default-jdk
    -  g++
    -  g++-4.4
    -  gcc-doc
    -  gfortran
    -  gfortran-doc
    -  git-core
    -  git-doc
    -  subversion
    -  qt4-designer
    -  qt4-dev-tools
    -  qt4-qmake
-  Development (universe)
    -  eclipse
-  Libraries - Development
    -  libgsl0-dev
-  Mathematics (universe)
    -  gnuplot
    -  libgsl0ldbl
-  Networking (universe)
    -  filezilla
-  Python Programming Language
    -  python-numpy
    -  python-numpy-doc
    -  python-setuptools
    -  python3.1
-  Python Programming Language (universe)
    -  pylint
    -  python-argparse
    -  python-gnuplot
    -  python-scientific
    -  python-scipy
    -  python-scitools
-  TeX Authoring
    -  texlive-latex-base
    -  texlive-latex-extra
    -  texlive-latex-recommended
-  Word Processing
    -  enscript

3.  Downloaded and installed Google Chrome.
4.  Downloaded source code for Python 2.7.2. Compiled and installed with
    \`make altinstall\`.
5.  Downloaded Pydev within Eclipse.
    :\* Added Python2.7 interpreter.